MERNA
A Database of Metal Ion Binding Sites in RNA
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ID:
PDB ID
NDB ID
Metal ion:
Not Specified
All
Na
Mg
K
Ca
V
Mn
Co
Zn
Sr
Ru
Rh
Cd
Ba
W
Os
Ir
Pt
Hg
Tl
Pb
Eu
Tb
Lu
Experimental method:
Not Specified
Fiber Diffraction
NMR
X-Ray Diffraction
Resolution ≤
.
Å
R-value ¹ ≤
.
Free R-value ¹ ≤
.
Binding motif:
Not Specified
Major groove of G.U wobble pair
Sheared G.A pair
Mg clamp
Metal ion zipper
Loop E
AA platform
Base tetrads
G-phosphate Mg binding motif
Type of binding ² :
diffuse
inner sphere
outer sphere
Distance from
Not Specified
metal ion to RNA
metal ion to water
: ≤
.
Å
¹
R-Value and Free R-Value only apply to
X-Ray Diffraction
²
Type of Binding
is not available in current version
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Primary References
Additional References
Both
Supported By:
LBNL
&
NIGMS of NIH