MERNA

A Database of Metal Ion Binding Sites in RNA

46 PDB files have been found to contain the metal ion Cadmium as specified per your search criterion:

• 1FEU (13 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of ribosomal protein tl5, one of the ctc family proteins, complexed with a fragment of 5s rrna.
• 1FFK (4 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the large ribosomal subunit from haloarcula marismortui at 2.4 angstrom resolution
• 1JJ2 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Fully refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
• 1K73 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of anisomycin bound to the 50s ribosomal subunit
• 1K8A (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of carbomycin a bound to the 50s ribosomal subunit of haloarcula marismortui
• 1K9M (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of tylosin bound to the 50s ribosomal subunit of haloarcula marismortui
• 1KC8 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of blasticidin s bound to the 50s ribosomal subunit
• 1KD1 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of spiramycin bound to the 50s ribosomal subunit of haloarcula marismortui
• 1KQS (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The haloarcula marismortui 50s complexed with a pretranslocational intermediate in protein synthesis
• 1M1K (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of azithromycin bound to the 50s ribosomal subunit of haloarcula marismortui
• 1M90 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of cca-phe-caproic acid-biotin and sparsomycin bound to the 50s ribosomal subunit
• 1MMS (8 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the ribosomal protein l11-rna complex
• 1N8R (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Structure of large ribosomal subunit in complex with virginiamycin m
• 1NJI (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Structure of chloramphenicol bound to the 50s ribosomal subunit
• 1Q7Y (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of ccdap-puromycin bound at the peptidyl transferase center of the 50s ribosomal subunit
• 1Q81 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of minihelix with 3' puromycin bound to a- site of the 50s ribosomal subunit.
• 1Q82 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of cc-puromycin bound to the a-site of the 50s ribosomal subunit
• 1Q86 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of cca-phe-cap-biotin bound simultaneously at half occupancy to both the a-site and p- site of the the 50s ribosomal subunit.
• 1QVF (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Structure of a deacylated trna minihelix bound to the e site of the large ribosomal subunit of haloarcula marismortui
• 1QVG (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Structure of cca oligonucleotide bound to the trna binding sites of the large ribosomal subunit of haloarcula marismortui
• 1S72 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
• 1VQ4 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "daa" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ5 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "raa" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ6 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of c-hpmn and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ7 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "dca" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ8 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of ccda-phe-cap-bio and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ9 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of cca-phe-cap-bio and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
• 1VQK (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of ccda-phe-cap-bio bound to the a site of the ribosomal subunit of haloarcula marismortui
• 1VQL (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "dcsn" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQM (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "dan" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQN (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of cc-hpmn and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
• 1VQO (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of ccpmn bound to the large ribosomal subunit of haloarcula marismortui
• 1VQP (5 Cd ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "rap" bound to the large ribosomal subunit of haloarcula marismortui
• 1W2B (4 Cd ions) (Within 6 Angstroms of any RNA atom) - Trigger factor ribosome binding domain in complex with 50s
• 1YHQ (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of azithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YI2 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of erythromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YIJ (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of telithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YIT (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of virginiamycin m and s bound to the 50s ribosomal subunit of haloarcula marismortui
• 1YJ9 (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the mutant 50s ribosomal subunit of haloarcula marismortui containing a three residue deletion
• 1YJN (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of clindamycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YJW (5 Cd ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of quinupristin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 2CV1 (2 Cd ions) (Within 6 Angstroms of any RNA atom) - Glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu), atp, and an analog of l-glutamate: a quaternary complex
• 2CV2 (2 Cd ions) (Within 6 Angstroms of any RNA atom) - Glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu) and an enzyme inhibitor, glu-ams
• 2DXI (3 Cd ions) (Within 6 Angstroms of any RNA atom) - A crystal structure of glutamyl-trna synthetase from thermus thermophilus complexed with trna(glu), atp, and l-glutamol
• 2HOZ (1 Cd ion) (Within 6 Angstroms of any RNA atom) - Inter-subunit signaling in gsam
• 488D (8 Cd ions) (Within 6 Angstroms of any RNA atom) - Catalytic rna enzyme-product complex

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