MERNA

A Database of Metal Ion Binding Sites in RNA

72 PDB files have been found to contain the metal ion Potassium as specified per your search criterion:

• 1DK1 (1 K ion) (Within 6 Angstroms of any RNA atom) - Detailed view of a key element of the ribosome assembly: crystal structure of the s15-rrna complex
• 1DUL (3 K ions) (Within 6 Angstroms of any RNA atom) - Structure of the ribonucleoprotein core of the e. coli signal recognition particle
• 1F7Y (1 K ion) (Within 6 Angstroms of any RNA atom) - The crystal structure of two uucg loops highlights the role played by 2'-hydroxyl groups in its unusual stability
• 1FFK (1 K ion) (Within 6 Angstroms of any RNA atom) - Crystal structure of the large ribosomal subunit from haloarcula marismortui at 2.4 angstrom resolution
• 1FFY (1 K ion) (Within 6 Angstroms of any RNA atom) - Insights into editing from an ile-trna synthetase structure with trna(ile) and mupirocin
• 1HC8 (2 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a conserved ribosomal protein-rna complex
• 1HQ1 (3 K ions) (Within 6 Angstroms of any RNA atom) - Structural and energetic analysis of rna recognition by a universally conserved protein from the signal recognition particle
• 1JBR (5 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the ribotoxin restrictocin and a 31- mer srd rna inhibitor
• 1JBS (6 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of ribotoxin restrictocin and a 29-mer srd rna analog
• 1JBT (6 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of ribotoxin restrictocin complexed with a 29-mer sarcin/ricin domain rna analog
• 1JJ2 (2 K ions) (Within 6 Angstroms of any RNA atom) - Fully refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
• 1K73 (2 K ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of anisomycin bound to the 50s ribosomal subunit
• 1K8A (3 K ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of carbomycin a bound to the 50s ribosomal subunit of haloarcula marismortui
• 1K9M (3 K ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of tylosin bound to the 50s ribosomal subunit of haloarcula marismortui
• 1KC8 (3 K ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of blasticidin s bound to the 50s ribosomal subunit
• 1KD1 (3 K ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of spiramycin bound to the 50s ribosomal subunit of haloarcula marismortui
• 1KQS (2 K ions) (Within 6 Angstroms of any RNA atom) - The haloarcula marismortui 50s complexed with a pretranslocational intermediate in protein synthesis
• 1L2X (1 K ion) (Within 6 Angstroms of any RNA atom) - Atomic resolution crystal structure of a viral rna pseudoknot
• 1M1K (2 K ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of azithromycin bound to the 50s ribosomal subunit of haloarcula marismortui
• 1M90 (2 K ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of cca-phe-caproic acid-biotin and sparsomycin bound to the 50s ribosomal subunit
• 1MJI (2 K ions) (Within 6 Angstroms of any RNA atom) - Detailed analysis of rna-protein interactions within the bacterial ribosomal protein l5/5s rrna complex
• 1N7A (9 K ions) (Within 6 Angstroms of any RNA atom) - Rip-radiation-damage induced phasing
• 1N7B (9 K ions) (Within 6 Angstroms of any RNA atom) - Rip-radiation-damage induced phasing
• 1N8R (1 K ion) (Within 6 Angstroms of any RNA atom) - Structure of large ribosomal subunit in complex with virginiamycin m
• 1NJI (2 K ions) (Within 6 Angstroms of any RNA atom) - Structure of chloramphenicol bound to the 50s ribosomal subunit
• 1P79 (3 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a bulged rna tetraplex: implications for a novel binding site in rna tetraplex
• 1Q7Y (2 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of ccdap-puromycin bound at the peptidyl transferase center of the 50s ribosomal subunit
• 1Q81 (2 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of minihelix with 3' puromycin bound to a- site of the 50s ribosomal subunit.
• 1Q82 (2 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of cc-puromycin bound to the a-site of the 50s ribosomal subunit
• 1Q86 (2 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of cca-phe-cap-biotin bound simultaneously at half occupancy to both the a-site and p- site of the the 50s ribosomal subunit.
• 1QU2 (1 K ion) (Within 6 Angstroms of any RNA atom) - Insights into editing from an ile-trna synthetase structure with trna(ile) and mupirocin
• 1QVF (2 K ions) (Within 6 Angstroms of any RNA atom) - Structure of a deacylated trna minihelix bound to the e site of the large ribosomal subunit of haloarcula marismortui
• 1QVG (2 K ions) (Within 6 Angstroms of any RNA atom) - Structure of cca oligonucleotide bound to the trna binding sites of the large ribosomal subunit of haloarcula marismortui
• 1S72 (2 K ions) (Within 6 Angstroms of any RNA atom) - Refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
• 1U6B (5 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a self-splicing group i intron with both exons
• 1VQ4 (3 K ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "daa" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ5 (3 K ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "raa" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ6 (2 K ions) (Within 6 Angstroms of any RNA atom) - The structure of c-hpmn and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ7 (3 K ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "dca" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ8 (2 K ions) (Within 6 Angstroms of any RNA atom) - The structure of ccda-phe-cap-bio and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ9 (2 K ions) (Within 6 Angstroms of any RNA atom) - The structure of cca-phe-cap-bio and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
• 1VQK (2 K ions) (Within 6 Angstroms of any RNA atom) - The structure of ccda-phe-cap-bio bound to the a site of the ribosomal subunit of haloarcula marismortui
• 1VQL (2 K ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "dcsn" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQM (2 K ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "dan" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQN (2 K ions) (Within 6 Angstroms of any RNA atom) - The structure of cc-hpmn and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
• 1VQO (2 K ions) (Within 6 Angstroms of any RNA atom) - The structure of ccpmn bound to the large ribosomal subunit of haloarcula marismortui
• 1VQP (3 K ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "rap" bound to the large ribosomal subunit of haloarcula marismortui
• 1W2B (2 K ions) (Within 6 Angstroms of any RNA atom) - Trigger factor ribosome binding domain in complex with 50s
• 1Y39 (2 K ions) (Within 6 Angstroms of any RNA atom) - Co-evolution of protein and rna structures within a highly conserved ribosomal domain
• 1Y3S (3 K ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 dis rna subtype f- mpd form
• 1YHQ (2 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of azithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YI2 (2 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of erythromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YIJ (2 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of telithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YIT (1 K ion) (Within 6 Angstroms of any RNA atom) - Crystal structure of virginiamycin m and s bound to the 50s ribosomal subunit of haloarcula marismortui
• 1YJ9 (2 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the mutant 50s ribosomal subunit of haloarcula marismortui containing a three residue deletion
• 1YJN (2 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of clindamycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YJW (2 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of quinupristin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YRJ (1 K ion) (Within 6 Angstroms of any RNA atom) - Crystal structure of apramycin bound to a ribosomal rna a site oligonucleotide
• 1ZCI (4 K ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 dis rna subtype f- monoclinic form
• 1ZHO (4 K ions) (Within 6 Angstroms of any RNA atom) - The structure of a ribosomal protein l1 in complex with mrna
• 1ZZN (1 K ion) (Within 6 Angstroms of any RNA atom) - Crystal structure of a group i intron/two exon complex that includes all catalytic metal ion ligands.
• 2ANN (1 K ion) (Within 6 Angstroms of any RNA atom) - Crystal strucutre (i) of nova-1 kh1/kh2 domain tandem with 25 nt rna hairpin
• 2ANR (1 K ion) (Within 6 Angstroms of any RNA atom) - Crystal strucutre (ii) of nova-1 kh1/kh2 domain tandem with 25 nt rna hairpin
• 2AWE (11 K ions) (Within 6 Angstroms of any RNA atom) - Base-tetrad swapping results in dimerization of rna quadruplexes: implications for formation of i-motif rna octaplex
• 2F4V (12 K ions) (Within 6 Angstroms of any RNA atom) - 30s ribosome + designer antibiotic
• 2FCX (3 K ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 dis kissing-loop in complex with neamine
• 2FCY (6 K ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 dis kissing-loop in complex with neomycin
• 2FCZ (4 K ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 dis kissing-loop in complex with ribostamycin
• 2FD0 (3 K ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 dis kissing-loop in complex with lividomycin
• 2GDI (3 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate
• 2GRB (11 K ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of an rna quadruplex containing inosine-tetrad
• 2HW8 (1 K ion) (Within 6 Angstroms of any RNA atom) - Structure of ribosomal protein l1-mrna complex at 2.1 resolution.

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