MERNA

A Database of Metal Ion Binding Sites in RNA

242 PDB files have been found to contain the metal ion Magnesium as specified per your search criterion:

• 1B23 (3 Mg ions) (Within 6 Angstroms of any RNA atom) - E. coli cysteinyl-trna and t. aquaticus elongation factor ef-tu:gtp ternary complex
• 1CC0 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the rhoa.gdp-rhogdi complex
• 1CX0 (12 Mg ions) (Within 6 Angstroms of any RNA atom) - Hepatitis delta virus ribozyme
• 1D4R (5 Mg ions) (Within 6 Angstroms of any RNA atom) - 29-mer fragment of human srp rna helix 6
• 1DFU (5 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of e.coli ribosomal protein l25 complexed with a 5s rrna fragment at 1.8 a resolution
• 1DK1 (9 Mg ions) (Within 6 Angstroms of any RNA atom) - Detailed view of a key element of the ribosome assembly: crystal structure of the s15-rrna complex
• 1DNO (4 Mg ions) (Within 6 Angstroms of any RNA atom) - A-dna/rna dodecamer r(gcg)d(tatacgc) mg binding sites
• 1DNT (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Rna/dna dodecamer r(gc)d(gtatacgc) with magnesium binding sites
• 1DNX (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Rna/dna dodecamer r(g)d(cgtatacgc) with magnesium binding sites
• 1DRZ (3 Mg ions) (Within 6 Angstroms of any RNA atom) - U1a spliceosomal protein/hepatitis delta virus genomic ribozyme complex
• 1DUH (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Crystal structure of the conserved domain iv of e. coli 4.5s rna
• 1DUL (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the ribonucleoprotein core of the e. coli signal recognition particle
• 1EGK (14 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a nucleic acid four-way junction
• 1EHZ (6 Mg ions) (Within 6 Angstroms of any RNA atom) - The crystal structure of yeast phenylalanine trna at 1.93 a resolution
• 1EVV (10 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of yeast phenylalanine transfer rna at 2.0 a resolution
• 1F27 (6 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a biotin-binding rna pseudoknot
• 1F7Y (9 Mg ions) (Within 6 Angstroms of any RNA atom) - The crystal structure of two uucg loops highlights the role played by 2'-hydroxyl groups in its unusual stability
• 1FEU (17 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of ribosomal protein tl5, one of the ctc family proteins, complexed with a fragment of 5s rrna.
• 1FFK (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the large ribosomal subunit from haloarcula marismortui at 2.4 angstrom resolution
• 1FFY (10 Mg ions) (Within 6 Angstroms of any RNA atom) - Insights into editing from an ile-trna synthetase structure with trna(ile) and mupirocin
• 1FIR (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Crystal structure of hiv-1 reverse transcription primer trna(lys3)
• 1FJG (96 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the thermus thermophilus 30s ribosomal subunit in complex with the antibiotics streptomycin, spectinomycin, and paromomycin
• 1FUF (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Crystal structure of a 14bp rna oligonucleotide containing double uu bulges: a novel intramolecular u*(au) base triple
• 1GID (24 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a group i ribozyme domain: principles of rna packing
• 1HC8 (21 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a conserved ribosomal protein-rna complex
• 1HNW (96 Mg ions) (Within 6 Angstroms of any RNA atom) - Ms2-rna hairpin (2thio-u -5-6) complex
• 1HNX (96 Mg ions) (Within 6 Angstroms of any RNA atom) - Solution structure of lna3:rna hybrid
• 1HNZ (96 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the thermus thermophilus 30s ribosomal subunit in complex with hygromycin b
• 1HQ1 (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural and energetic analysis of rna recognition by a universally conserved protein from the signal recognition particle
• 1HR0 (65 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of initiation factor if1 bound to the 30s ribosomal subunit
• 1HR2 (42 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure analysis of a mutant p4-p6 domain (delc209) of tetrahymena themophila group i intron
• 1I6H (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Rna polymerase ii elongation complex
• 1I7J (5 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of 2'-o-me(cgcgcg)2: an rna duplex at 1.19 a resolution. 2-methyl-2,4-pentanediol and magnesium binding
• 1I94 (75 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structures of the small ribosomal subunit with tetracycline, edeine and if3
• 1I95 (75 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the 30s ribosomal subunit from thermus thermophilus in complex with edeine
• 1I96 (75 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the 30s ribosomal subunit from thermus thermophilus in complex with the translation initiation factor if3 (c-terminal domain)
• 1I97 (75 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the 30s ribosomal subunit from thermus thermophilus in complex with tetracycline
• 1I9V (3 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure analysis of a trna-neomycin complex
• 1IBK (113 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the thermus thermophilus 30s ribosomal subunit in complex with the antibiotic paromomycin
• 1IBL (125 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the thermus thermophilus 30s ribosomal subunit in complex with a messenger rna fragment and cognate transfer rna anticodon stem-loop bound at the a site and with the antibiotic paromomycin
• 1IBM (120 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the thermus thermophilus 30s ribosomal subunit in complex with a messenger rna fragment and cognate transfer rna anticodon stem-loop bound at the a site
• 1IK5 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a 14mer rna containing double uu bulges in two crystal forms: a novel u*(au) intramolecular base triple
• 1J1U (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of archaeal tyrosyl-trna synthetase complexed with trna(tyr) and l-tyrosine
• 1J2B (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of archaeosine trna-guanine transglycosylase complexed with lambda-form trna(val)
• 1J5A (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural basis for the interaction of antibiotics with the peptidyl transferase center in eubacteria
• 1JID (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Human srp19 in complex with helix 6 of human srp rna
• 1JJ2 (117 Mg ions) (Within 6 Angstroms of any RNA atom) - Fully refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
• 1JJM (12 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of hiv-1(lai) genomic rna dis.
• 1JJN (14 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of hiv-1(mal) genomic rna dis
• 1JZV (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Crystal structure of a bulged rna from the sl2 stem-loop of the hiv-1 psi-rna
• 1JZX (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural basis for the interaction of antibiotics with the peptidyl transferase center in eubacteria
• 1JZY (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural basis for the interaction of antibiotics with the peptidyl transferase center in eubacteria
• 1JZZ (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural basis for the interaction of antibiotics with the peptidyl transferase center in eubacteria
• 1K01 (3 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural basis for the interaction of antibiotics with the peptidyl transferase center in eubacteria
• 1K73 (117 Mg ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of anisomycin bound to the 50s ribosomal subunit
• 1K8A (119 Mg ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of carbomycin a bound to the 50s ribosomal subunit of haloarcula marismortui
• 1K9M (119 Mg ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of tylosin bound to the 50s ribosomal subunit of haloarcula marismortui
• 1K9W (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Hiv-1(mal) rna dimerization initiation site
• 1KC8 (117 Mg ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of blasticidin s bound to the 50s ribosomal subunit
• 1KD1 (119 Mg ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of spiramycin bound to the 50s ribosomal subunit of haloarcula marismortui
• 1KQS (117 Mg ions) (Within 6 Angstroms of any RNA atom) - The haloarcula marismortui 50s complexed with a pretranslocational intermediate in protein synthesis
• 1KXK (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Ms2-rna hairpin (c-10) complex
• 1L2X (6 Mg ions) (Within 6 Angstroms of any RNA atom) - Atomic resolution crystal structure of a viral rna pseudoknot
• 1L8V (10 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a mutant (c109g,g212c) p4-p6 domain of the group i intron from tetrahymena thermophilia
• 1L9A (24 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of srp19 in complex with the s domain of signal recognition particle rna
• 1LAJ (1 Mg ion) (Within 6 Angstroms of any RNA atom) - The structure of tomato aspermy virus by x-ray crystallography
• 1LNG (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the srp19-7s.s srp rna complex of m. jannaschii
• 1LNT (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the highly conserved rna internal loop of srp
• 1M1K (117 Mg ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of azithromycin bound to the 50s ribosomal subunit of haloarcula marismortui
• 1M90 (119 Mg ions) (Within 6 Angstroms of any RNA atom) - Co-crystal structure of cca-phe-caproic acid-biotin and sparsomycin bound to the 50s ribosomal subunit
• 1MFQ (5 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure analysis of a ternary s-domain complex of human signal recognition particle
• 1MJI (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Detailed analysis of rna-protein interactions within the bacterial ribosomal protein l5/5s rrna complex
• 1MMS (19 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the ribosomal protein l11-rna complex
• 1MZP (3 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the l1 protuberance in the ribosome
• 1N32 (158 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the thermus thermophilus 30s ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the first codon position at the a site with paromomycin
• 1N33 (106 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the thermus thermophilus 30s ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
• 1N77 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of thermus thermophilus glutamyl-trna synthetase complexed with trna(glu) and atp.
• 1N78 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of thermus thermophilus glutamyl-trna synthetase complexed with trna(glu) and glutamol-amp.
• 1N8R (117 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of large ribosomal subunit in complex with virginiamycin m
• 1NBS (12 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the specificity domain of ribonuclease p rna
• 1NJI (117 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of chloramphenicol bound to the 50s ribosomal subunit
• 1NTB (1 Mg ion) (Within 6 Angstroms of any RNA atom) - 2.9 a crystal structure of streptomycin rna-aptamer complex
• 1NUJ (10 Mg ions) (Within 6 Angstroms of any RNA atom) - The leadzyme structure bound to mg(h20)6(ii) at 1.8 a resolution
• 1NUV (10 Mg ions) (Within 6 Angstroms of any RNA atom) - The leadzyme ribozyme bound to mg(h2o)6(ii) and sr(ii) at 1.8 a resolution
• 1O3Z (8 Mg ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 dis(mal) duplex ru hexamine-soaked
• 1OB2 (1 Mg ion) (Within 6 Angstroms of any RNA atom) - E. coli elongation factor ef-tu complexed with the antibiotic kirromycin, a gtp analog, and phe-trna
• 1PJO (6 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of an rna/dna hybrid of hiv-1 ppt
• 1Q7Y (117 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of ccdap-puromycin bound at the peptidyl transferase center of the 50s ribosomal subunit
• 1Q81 (117 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of minihelix with 3' puromycin bound to a- site of the 50s ribosomal subunit.
• 1Q82 (117 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of cc-puromycin bound to the a-site of the 50s ribosomal subunit
• 1Q86 (118 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of cca-phe-cap-biotin bound simultaneously at half occupancy to both the a-site and p- site of the the 50s ribosomal subunit.
• 1QA6 (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a conserved ribosomal protein-rna complex
• 1QF4 (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Design, synthesis, and x-ray crystal structure of an enzyme bound bisubstrate hybrid inhibitor of adenylosuccinate synthetase
• 1QF5 (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Design, synthesis, and x-ray crystal structure of an enzyme bound bisubstrate hybrid inhibitor of adenylosuccinate synthetase
• 1QU2 (10 Mg ions) (Within 6 Angstroms of any RNA atom) - Insights into editing from an ile-trna synthetase structure with trna(ile) and mupirocin
• 1QVF (119 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of a deacylated trna minihelix bound to the e site of the large ribosomal subunit of haloarcula marismortui
• 1QVG (116 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of cca oligonucleotide bound to the trna binding sites of the large ribosomal subunit of haloarcula marismortui
• 1R9S (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Rna polymerase ii strand separated elongation complex, matched nucleotide
• 1R9T (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Rna polymerase ii strand separated elongation complex, matched nucleotide
• 1S0V (8 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural basis for substrate selection by t7 rna polymerase
• 1S72 (116 Mg ions) (Within 6 Angstroms of any RNA atom) - Refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
• 1S76 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - T7 rna polymerase alpha beta methylene atp elongation complex
• 1S77 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - T7 rna polymerase alpha beta methylene atp elongation complex
• 1T03 (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Hiv-1 reverse transcriptase crosslinked to tenofovir terminated template-primer (complex p)
• 1TFW (2 Mg ions) (Within 6 Angstroms of any RNA atom) - How cca is added to the 3' end of immature trna without the use of an oligonucleotide template
• 1TFY (4 Mg ions) (Within 6 Angstroms of any RNA atom) - How cca is added to the 3' end of immature trna without the use of an oligonucleotide template
• 1TN2 (5 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystallographic and biochemical investigation of the lead(ii)-catalyzed hydrolysis of yeast phenylalanine t/rna
• 1TRA (5 Mg ions) (Within 6 Angstroms of any RNA atom) - Restrained refinement of the monoclinic form of yeast phenylalanine transfer rna. temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles
• 1TTT (6 Mg ions) (Within 6 Angstroms of any RNA atom) - Phe-trna, elongation factor ef-tu:gdpnp ternary complex
• 1U6B (13 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a self-splicing group i intron with both exons
• 1UN6 (13 Mg ions) (Within 6 Angstroms of any RNA atom) - The crystal structure of a zinc finger - rna complex reveals two modes of molecular recognition
• 1VQ4 (117 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "daa" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ5 (118 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "raa" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ6 (117 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of c-hpmn and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ7 (118 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "dca" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ8 (94 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of ccda-phe-cap-bio and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
• 1VQ9 (94 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of cca-phe-cap-bio and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
• 1VQK (93 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of ccda-phe-cap-bio bound to the a site of the ribosomal subunit of haloarcula marismortui
• 1VQL (94 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "dcsn" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQM (94 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "dan" bound to the large ribosomal subunit of haloarcula marismortui
• 1VQN (94 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of cc-hpmn and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
• 1VQO (94 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of ccpmn bound to the large ribosomal subunit of haloarcula marismortui
• 1VQP (94 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of the transition state analogue "rap" bound to the large ribosomal subunit of haloarcula marismortui
• 1VS5 (60 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamycin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is describ
• 1VS6 (110 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamycin at 3.5a resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is describ
• 1VS7 (62 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamycin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is describ
• 1VS8 (111 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamycin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is describ
• 1W2B (116 Mg ions) (Within 6 Angstroms of any RNA atom) - Trigger factor ribosome binding domain in complex with 50s
• 1W55 (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Structure of the bifunctional ispdf from campylobacter jejuni
• 1WMQ (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the hutp antitermination complex bound to a single stranded region of hut mrna
• 1WPU (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the hutp antitermination complex bound to a single stranded region of hut mrna
• 1WRQ (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of hutp-antitermination complex
• 1X8W (38 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the tetrahymena ribozyme: base triple sandwich and metal ion at the active site
• 1XJR (2 Mg ions) (Within 6 Angstroms of any RNA atom) - The structure of a rigorously conserved rna element within the sars virus genome
• 1XMO (107 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of mnm5u34t6a37-trnalysuuu complexed with aag-mrna in the decoding center
• 1XMQ (107 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of t6a37-asllysuuu aaa-mrna bound to the decoding center
• 1XNQ (107 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of an inosine-adenine wobble base pair complex in the context of the decoding center
• 1XNR (108 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of an inosine-cytosine wobble base pair in the context of the decoding center
• 1XP7 (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 subtype f genomic rna dimerization initiation site
• 1XPE (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 subtype b genomic rna dimerization initiation site
• 1XPF (3 Mg ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 subtype a genomic rna dimerization initiation site
• 1XPO (6 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin
• 1XPR (6 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic 5a-formylbicyclomycin
• 1XPU (6 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (fpdb)
• 1Y0Q (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of an active group i ribozyme-product complex
• 1Y1W (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Complete rna polymerase ii elongation complex
• 1Y26 (5 Mg ions) (Within 6 Angstroms of any RNA atom) - A-riboswitch-adenine complex
• 1Y39 (18 Mg ions) (Within 6 Angstroms of any RNA atom) - Co-evolution of protein and rna structures within a highly conserved ribosomal domain
• 1Y3S (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 dis rna subtype f- mpd form
• 1Y73 (8 Mg ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 dis(mal) duplex pt-soaked
• 1Y77 (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Complete rna polymerase ii elongation complex with substrate analogue gmpcpp
• 1Y95 (10 Mg ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 dis(mal) duplex pb-soaked
• 1Y99 (7 Mg ions) (Within 6 Angstroms of any RNA atom) - Hiv-1 subtype a dis rna duplex
• 1YHQ (93 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of azithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YI2 (116 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of erythromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YIJ (116 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of telithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YIT (118 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of virginiamycin m and s bound to the 50s ribosomal subunit of haloarcula marismortui
• 1YJ9 (116 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the mutant 50s ribosomal subunit of haloarcula marismortui containing a three residue deletion
• 1YJN (116 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of clindamycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YJW (117 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of quinupristin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
• 1YKV (7 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the diels-alder ribozyme complexed with the product of the reaction between n-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
• 1YLS (13 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of selenium-modified diels-alder ribozyme complexed with the product of the reaction between n-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
• 1YRJ (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Crystal structure of apramycin bound to a ribosomal rna a site oligonucleotide
• 1YTU (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural basis for 5'-end-specific recognition of the guide rna strand by the a. fulgidus piwi protein
• 1YVP (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Ro autoantigen complexed with rnas
• 1ZBH (8 Mg ions) (Within 6 Angstroms of any RNA atom) - 3`-end specific recognition of histone mrna stem-loop by 3`-exonuclease
• 1ZZ5 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Molecular recognition of rna by neomycin and a restricted neomycin derivative
• 1ZZN (5 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a group i intron/two exon complex that includes all catalytic metal ion ligands.
• 2A04 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Molecular recognition of rna by neomycin and a restricted neomycin derivative
• 2A43 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a luteoviral rna pseudoknot and model for a minimal ribosomal frameshifting motif
• 2ANN (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal strucutre (i) of nova-1 kh1/kh2 domain tandem with 25 nt rna hairpin
• 2ANR (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal strucutre (ii) of nova-1 kh1/kh2 domain tandem with 25 nt rna hairpin
• 2AVY (60 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the bacterial ribosome from escherichia coli at 3.5 a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
• 2AW4 (110 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the bacterial ribosome from escherichia coli at 3.5 a resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
• 2AW7 (62 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the bacterial ribosome from escherichia coli at 3.5 a resolution. this file contains the 30s subunit of the second 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
• 2AWB (111 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the bacterial ribosome from escherichia coli at 3.5 a resolution. this file contains the 50s subunit of the second 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
• 2AZX (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Charged and uncharged trnas adopt distinct conformations when complexed with human tryptophanyl-trna synthetase
• 2B63 (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Complete rna polymerase ii-rna inhibitor complex
• 2B8R (6 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of hiv-1(lai) genomic rna dis
• 2B8S (6 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of hiv-1(mal) genomic rna dis
• 2CV0 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu) and l-glutamate
• 2CV1 (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu), atp, and an analog of l-glutamate: a quaternary complex
• 2CV2 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Glutamyl-trna synthetase from thermus thermophilus in complex with trna(glu) and an enzyme inhibitor, glu-ams
• 2DB3 (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural basis for rna unwinding by the dead-box protein drosophila vasa
• 2DR8 (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Complex structure of cca-adding enzyme with trnaminidc and ctp
• 2DRA (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Complex structure of cca-adding enzyme with trnaminidcc and atp
• 2DVI (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Complex structure of cca-adding enzyme, mini-dcc and ctp
• 2DXI (2 Mg ions) (Within 6 Angstroms of any RNA atom) - A crystal structure of glutamyl-trna synthetase from thermus thermophilus complexed with trna(glu), atp, and l-glutamol
• 2E2H (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Rna polymerase ii elongation complex at 5 mm mg2+ with gtp
• 2E2J (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Rna polymerase ii elongation complex in 5 mm mg+2 with gmpcpp
• 2EZ6 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of aquifex aeolicus rnase iii (d44n) complexed with product of double-stranded rna processing
• 2F4V (101 Mg ions) (Within 6 Angstroms of any RNA atom) - 30s ribosome + designer antibiotic
• 2FMT (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Methionyl-trnafmet formyltransferase complexed with formyl-methionyl-trnafmet
• 2FQN (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the homo sapiens cytoplasmic ribosomal decoding a site
• 2G3S (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Rna structure containing gu base pairs
• 2G5K (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the homo sapiens cytoplasmic ribosomal decoding site complexed with apramycin
• 2G8F (2 Mg ions) (Within 6 Angstroms of any RNA atom) - B. halodurans rnase h catalytic domain e188a mutant in complex with mg2+ and rna/dna hybrid (non-p nick at the active site)
• 2G8H (2 Mg ions) (Within 6 Angstroms of any RNA atom) - B. halodurans rnase h catalytic domain d192n mutant in complex with mg2+ and rna/dna hybrid (non-p nick at the active site)
• 2G8U (2 Mg ions) (Within 6 Angstroms of any RNA atom) - B. halodurans rnase h catalytic domain d132n mutant in complex with mg2+ and rna/dna hybrid (non-p nick at the active site)
• 2G8V (2 Mg ions) (Within 6 Angstroms of any RNA atom) - B. halodurans rnase h catalytic domain e188a mutant in complex with mg2+ and rna/dna hybrid (reaction product)
• 2GCS (6 Mg ions) (Within 6 Angstroms of any RNA atom) - Pre-cleavage state of the thermoanaerobacter tengcongensis
• 2GCV (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Post-cleavage state of the thermoanaerobacter tengcongensis
• 2GDI (6 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate
• 2GIS (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the s-adenosylmethionine riboswitch mrna regulatory element
• 2HO6 (3 Mg ions) (Within 6 Angstroms of any RNA atom) - Post-cleavage state of the thermoanaerobacter tengcongensis glms ribozyme
• 2HO7 (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Pre-cleavage state of the thermoanaerobacter tengcongensis glms ribozyme bound to glucose-6-phosphate
• 2HOJ (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of an e. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions
• 2HOL (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Crystal structure of an e. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions
• 2HOM (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of an e. coli thi-box riboswitch bound to thiamine monophosphate
• 2HOP (3 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of an e. coli thi-box riboswitch bound to pyrithiamine
• 2HW8 (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Structure of ribosomal protein l1-mrna complex at 2.1 resolution.
• 2HYI (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the human exon junction complex with a trapped dead-box helicase bound to rna
• 2I2P (62 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
• 2I2T (119 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
• 2I2U (58 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
• 2I2V (119 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of ribosome with messenger rna and the anticodon stem-loop of p-site trna. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.
• 2I91 (2 Mg ions) (Within 6 Angstroms of any RNA atom) - 60kda ro autoantigen in complex with a fragment of misfolded rna
• 2J00 (741 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the thermus thermophilus 70s ribosome complexed with mrna, trna and paromomycin (part 1 of 4). this file contains the 30s subunit, mrna, a-, p- and e-site trnas and paromomycin for molecule i.
• 2J02 (638 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of the thermus thermophilus 70s ribosome complexed with mrna, trna and paromomycin (part 3 of 4). this file contains the 30s subunit, mrna, a-, p- and e-site trnas and paromomycin for molecule ii.
• 2J28 (111 Mg ions) (Within 6 Angstroms of any RNA atom) - Model of e. coli srp bound to 70s rncs
• 2NVQ (3 Mg ions) (Within 6 Angstroms of any RNA atom) - Rna polymerase ii elongation complex in 150 mm mg+2 with 2`dutp
• 2NVT (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Rna polymerase ii elongation complex in 150 mm mg+2 with gmpcpp
• 2NVZ (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Rna polymerase ii elongation complex with utp, updated 11/2006
• 2NZ4 (16 Mg ions) (Within 6 Angstroms of any RNA atom) - Structural investigation of the glms ribozyme bound to its catalytic cofactor
• 2TRA (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer rna crystals
• 301D (5 Mg ions) (Within 6 Angstroms of any RNA atom) - Capturing the structure of a catalytic rna intermediate
• 310D (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of 2'-o-me(cgcgcg)2: an rna duplex at 1.3 a resolution. hydration pattern of 2'-o-methylated rna
• 354D (5 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of loop e from e. coli 5s rrna
• 357D (8 Mg ions) (Within 6 Angstroms of any RNA atom) - 3.5 a structure of fragment i from e. coli 5s rrna
• 364D (12 Mg ions) (Within 6 Angstroms of any RNA atom) - 3.0 a structure of fragment i from e. coli 5s rrna
• 3TRA (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer rna crystals
• 429D (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of a leadzyme; metal binding and implications for catalysis
• 430D (9 Mg ions) (Within 6 Angstroms of any RNA atom) - Structure of sarcin/ricin loop from rat 28s rrna
• 437D (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Crystal structure of an rna pseudoknot from beet western yellow virus involved in ribosomal frameshifting
• 462D (8 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of the hiv-1 genomic rna dimerization initiation site
• 468D (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Crystal structure and improved antisense properties of 2'-o- (2-methoxyethyl)-rna
• 469D (1 Mg ion) (Within 6 Angstroms of any RNA atom) - Crystal structure and improved antisense properties of 2'-o- (2-methoxyethyl)-rna
• 470D (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure and improved antisense properties of 2'-o- (2-methoxyethyl)-rna
• 471D (2 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure and improved antisense properties of 2'-o- (2-methoxyethyl)-rna
• 4TNA (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Further refinement of the structure of yeast t/rna phe
• 4TRA (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer rna crystals
• 6TNA (4 Mg ions) (Within 6 Angstroms of any RNA atom) - Crystal structure of yeast phenylalanine t/rna. i.crystallographic refinement

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